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Wednesday, September 14, 2011

Genetic Codes (RNA & DNA Codons)

RNA Codons


Genetic Codes
 The genetic code is traditionally represented as a RNA codon table due to the biochemical nature of the protein translation process. However, with the rise of computational biology and genomics, proteins have become increasingly studied at a genomic level. As a result, the practice of representing the genetic code as a DNA codon table has become more popular. The DNA codons in such tables occur on the sense DNA strand and are arranged at a 5' → 3' directionality.


nonpolarpolarbasicacidic(stop codon)
 2nd base
TCAG
1st baseTTTT(Phe/F) PhenylalanineTCT(Ser/S) SerineTAT(Tyr/Y) TyrosineTGT(Cys/C) Cysteine
TTC(Phe/F) PhenylalanineTCC(Ser/S) SerineTAC(Tyr/Y) TyrosineTGC(Cys/C) Cysteine
TTA(Leu/L) LeucineTCA(Ser/S) SerineTAAStop (Ochre)TGAStop (Opal)
TTG(Leu/L) LeucineTCG(Ser/S) SerineTAGStop (Amber)TGG(Trp/W) Tryptophan    
CCTT(Leu/L) LeucineCCT(Pro/P) ProlineCAT(His/H) HistidineCGT(Arg/R) Arginine
CTC(Leu/L) LeucineCCC(Pro/P) ProlineCAC(His/H) HistidineCGC(Arg/R) Arginine
CTA(Leu/L) LeucineCCA(Pro/P) ProlineCAA(Gln/Q) GlutamineCGA(Arg/R) Arginine
CTG(Leu/L) LeucineCCG(Pro/P) ProlineCAG(Gln/Q) GlutamineCGG(Arg/R) Arginine
AATT(Ile/I) IsoleucineACT(Thr/T) Threonine        AAT(Asn/N) AsparagineAGT(Ser/S) Serine
ATC(Ile/I) IsoleucineACC(Thr/T) ThreonineAAC(Asn/N) AsparagineAGC(Ser/S) Serine
ATA(Ile/I) IsoleucineACA(Thr/T) ThreonineAAA(Lys/K) LysineAGA(Arg/R) Arginine
ATG[A](Met/M) MethionineACG(Thr/T) ThreonineAAG(Lys/K) LysineAGG(Arg/R) Arginine
GGTT(Val/V) ValineGCT(Ala/A) AlanineGAT(Asp/D) Aspartic acidGGT(Gly/G) Glycine
GTC(Val/V) ValineGCC(Ala/A) AlanineGAC(Asp/D) Aspartic acidGGC(Gly/G) Glycine
GTA(Val/V) ValineGCA(Ala/A) AlanineGAA(Glu/E) Glutamic acidGGA(Gly/G) Glycine
GTG(Val/V) ValineGCG(Ala/A) AlanineGAG(Glu/E) Glutamic acidGGG(Gly/G) Glycine

A The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an DNA's coding region is where translation into protein begins.[1]

A Mapping of Amino Acids and Stop Signals to DNA Codons
Amino Acid/SignalCodonsAmino Acid/SignalCodons
AGCT, GCC, GCA, GCGCTGT, TGC
DGAT, GACEGAA, GAG
FTTT, TTCGGGT, GGC, GGA, GGG
HCAT, CACIATT, ATC, ATA
KAAA, AAGLTTA, TTG, CTT, CTC, CTA, CTG
MATGNAAT, AAC
PCCT, CCC, CCA, CCGQCAA, CAG
RCGT, CGC, CGA, CGG, AGA, AGGSTCT, TCC, TCA, TCG, AGT, AGC
TACT, ACC, ACA, ACGVGTT, GTC, GTA, GTG
WTGGYTAT, TAC
STARTATGSTOPTAA, TGA, TAG

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